Cell cycle and genome stability

Endogenous metabolic products, such as reactive oxygen species, and exogenous physical and chemical genotoxic stress, constantly assault the genetic material in the cell. It has been estimated that there are about 100.000 lesions per cell per day in humans. In response to such a high levels of DNA damage, sophisticated mechanisms have evolved to coordinate cell cycle progression with DNA repair. When those systems fail or the rate of DNA damage exceeds the capacity of the cell to repair it, the accumulation of errors can overwhelm the cell and result in early senescence, apoptosis, or cancer.

Recently, a rapid progress has been made in defining the cellular response to DNA damage. After a DNA damage has been produced, a DNA damage response (DDR) signal is triggered in order to couple DNA repair with cell cycle progression. This signal is driven by phosphorylation events, (predominantly serine and threonine residues) that activate both the repair of the broken DNA and the DNA damage checkpoint arrest. While the importance of several kinases in the DDR has been well documented over the last years, the complex role of protein dephosphorylation has only begun to be investigated. Surprisingly, different studies have pointed forward the essential function of several phosphatases in DNA repair, not only by counteracting the DNA damage-induced phosphorylation events to promote reentry in the cell cycle, but also by playing a direct role in the repair process.

One of the best-described models to analyse DNA repair is the homing endonuclease HO system. Since the HO is a site-specific endonuclease, we can explore the repair of a single DNA cut by using standard genomic assays, gathering information about how the broken DNA is repaired by the cell (see Figure). By using this methodology and other molecular and cellular biology techniques, our goal is to understand how protein phosphatases are involved in the repair of a DNA lesion, their regulation during the activation of the DNA damage response and their targets in the process, in o order to obtain a complete picture of the role of these proteins in the maintenance of genome stability.

Analysis of DNA repair. The location and behavior of the DNA lesion can be detected in the cell nucleus using fluorescence microscopy.

Analysis of DNA repair
A) Upon generation of a double strand break (in black) cells can repair the DNA lesion by using a homologous sequence (in red) throughout the execution of several processes that ensure an efficient recovery of the DNA break.
B) The fulfilling of each DNA repair process can be followed by using specific genomic approaches. An example of an assay to detect DNA-end resection by Southern blot is shown.
C) The localization and behaviour of the HO-induced DNA lesion can be detected within the nucleus by using fluoresce microscopy.
D) The efficiency of the repair process can be also measured by using genomic strategies. An HO-cut induced at chromosome III is quickly processed by using a donor sequence located at chromosome V to regenerate the broken DNA.

Image description

Group members

Andrés Clemente-Blanco Principal Investigator
Esmeralda Alonso Postdoctoral Student
Facundo Ramos Ochoa PhD Student
María Teresa Villoria PhD Student
Adrián Campos Master Student
Eva Merino García Technician

Contact

Andrés Clemente Blanco andresclemente@usal.es
923294887
Laboratory 2.3

Recent publications

San-Segundo, P.A., Clemente-Blanco, A. (2019)
Resolvases, Dissolvases, and Helicases in Homologous Recombination: Clearing the Road for Chromosome Segregation
Genes doi: 10.3390/genes11010071
Campos, A., Clemente-Blanco, A. (2019)
Cell cycle and DNA repair regulation in the damage response: Protein phosphatases take over the reins
International Journal of Molecular Sciences doi: 10.3390/ijms21020446
Villoria MT, Gutiérrez-Escribano P, Alonso-Rodríguez E, Ramos F, Merino E, Campos A, Montoya A, Kramer H, Aragón L, Clemente-Blanco A. (2019)
PP4 phosphatase cooperates in recombinational DNA repair by enhancing double-strand break end resection
Nucleic Acids Research. doi: 10.1093/nar/gkz794
Ramos F, Villoria MT, Alonso-Rodríguez E, Clemente-Blanco A. (2019)
Role of protein phosphatases PP1, PP2A, PP4 and Cdc14 in the DNA damage response.
Cell Stress. 21;3(3):70-85. doi: 10.15698/j.cub.2017.10.016.
Villoria MT, Ramos F, Dueñas E, Faull P, Cutillas PR, Clemente-Blanco A (2017)
Stabilization of the methaphase spindle by Cdc14 is required for recombinational DNA repair.
EMBO Journal 4;36(1):79-101
Clemente-Blanco A. (2017)
Nucleolar condensation: A new mechanism to control mitotic exit.
Curr Biol. 20;27(22):R1220-R1222. doi: 10.1016/j.cub.2017.10.016.
Bermúdez-López M, Villoria MT, Esteras M, Jarmuz A, Torres-Rosell J, Clemente-Blanco A, Aragon L. (2016)
Sgs1´s role in DNA end resection, HJ dissolution, and crossover suppresion require a two-step SUMO regulation dependen ton Smc5/6
Genes Dev. 1;30(11):1339-56. doi: 10.1101/gad.278275.116

Research grants

MINECO PGC2018-097963-B-I00